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List of Publications

Publications

    R Albert, BR Acharya, BW Jeon, JGT Zanudo, M Zhu, K Osman, S. Assmann
    PLoS Biology, 2017
    C Campbell, S Aucott, J Ruths, D Ruths, K Shea, R Albert
    Scientific Reports, 2017
    Zanudo, Jorge GT; Yang, Gang; Albert, Reka;
    Proceedings of the National Academy of Sciences , 2017
    Campbell, Colin; Shea, Katriona; Yang, Suann; Albert, Reka;
    Journal of Complex Networks, 2016
    Saadatpour, Assieh; Albert, Reka;
    EPJ Nonlinear Biomedical Physics, 2016
    Zanudo, Jorge GT; Albert, Reka;
    PLoS Comput Biol, 2015
    Albert, Reka; Robeva, Raina;
    Algebraic and discrete mathematical methods for modern biology, 2015
    Steinway, Steven N; Biggs, Matthew B; Loughran Jr, Thomas P; Papin, Jason A; Albert, Reka;
    PLoS Comput Biol, 2015
    Rajtmajer, Sarah M; Roy, Arnab; Albert, Reka; Molenaar, Peter CM; Hillary, Frank G;
    Frontiers in neuroanatomy, 2015
    Campbell, Colin; Ruths, Justin; Ruths, Derek; Shea, Katriona; Albert, Reka;
    Scientific reports, 2015
    Steinway, Steven Nathaniel; Zanudo, Jorge Gomez Tejeda; Michel, Paul J; Feith, David J; Loughran, Thomas P; Albert, Reka;
    NPJ Systems Biology and Applications, 2015
    LaBar, Thomas; Campbell, Colin; Yang, Suann; Albert, Reka; Shea, Katriona;
    Theoretical ecology, 2014
    Albert, Reka; DasGupta, Bhaskar; Mobasheri, Nasim;
    Physical Review E, 2014
    Campbell, Colin; Albert, Reka;
    BMC systems biology, 2014
    Jones, Alexander M; Xuan, Yuanhu; Xu, Meng; Wang, Rui-Sheng; Ho, Cheng-Hsun; Lalonde, Sylvie; You, Chang Hun; Sardi, Maria I; Parsa, Saman A; Smith-Valle, Erika;
    Science, 2014
    Albert, Reka; Thakar, Juilee;
    Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2014
    Steinway, Steven Nathaniel; Zanudo, Jorge GT; Ding, Wei; Rountree, Carl Bart; Feith, David J; Loughran, Thomas P; Albert, Reka;
    Cancer research, 2014
    Campbell, Colin; Shea, Katriona; Albert, Reka;
    Science, 2014
    Sun, Zhongyao; Jin, Xiaofen; Albert, Reka; Assmann, Sarah M;
    PLoS Comput Biol, 2014
    Mandala, Supreet Reddy; Kumara, Soundar RT; Rao, Calyampudi Radhakrishna; Albert, Reka;
    Operational Research, 2013
    Saadatpour, Assieh; Albert, Reka;
    Methods, 2013
    Lass, Sandra; Hudson, Peter J; Thakar, Juilee; Saric, Jasmina; Harvill, Eric; Albert, Reka; Perkins, Sarah E;
    Journal of The Royal Society Interface, 2013
    Saadatpour, Assieh; Albert, Reka; Reluga, Timothy C;
    SIAM Journal on Applied Dynamical Systems, 2013
    Wang, Rui-Sheng; Albert, Reka;
    Physical Review E, 2013
    Wang, Ruishengg; Sun, Zhongyao; Albert, Reka;
    International Transactions in Operational Research, 2013
    Albert, Reka; DasGupta, Bhaskar; Mobasheri, Nasim;
    arXiv preprint arXiv:1307.7385, 2013
    LaBar, Thomas; Campbell, Colin; Yang, Suann; Albert, Reka; Shea, Katriona;
    Theoretical ecology, 2013
    Zanudo, Jorge GT; Albert, Reka;
    Chaos: An Interdisciplinary Journal of Nonlinear Science, 2013
    Albert, Reka; Collins, James J; Glass, Leon;
    Chaos: An Interdisciplinary Journal of Nonlinear Science, 2013
    Yang, Suann; Albert, Reka; Carlo, Tom͍s A;
    Ecosphere, 2013
    Jin, Xiaofen; Wang, Rui-Sheng; Zhu, Mengmeng; Jeon, Byeong Wook; Albert, Reka; Chen, Sixue; Assmann, Sarah M;
    The Plant Cell, 2013
    Cui, LiYing; Kumara, Soundar; Albert, Reka;
    Handbook of Optimization in Complex Networks, 2012
    Thakar, Juilee; Pathak, Ashutosh K; Murphy, Lisa; Albert, Reka; Cattadori, Isabella M;
    Plos Comput biol, 2012
    Motter, Adilson E; Albert, Reka;
    Phys. Today, 2012
    Campbell, Colin; Yang, Suann; Shea, Katriona; Albert, Reka;
    Physical Review E, 2012
    Wang, Rui-Sheng; Saadatpour, Assieh; Albert, Reka;
    Physical biology, 2012
    Saadatpour, Assieh; Albert, Reka;
    Computational Modeling of Signaling Networks, 2012
    Ding, W; Dang, H; You, H; Steinway, S; Takahashi, Y; Wang, HG; Liao, J; Stiles, B; Albert, R; Rountree, CB;
    Oncogenesis, 2012
    Campbell, Colin; Yang, Suann; Albert, Reka; Shea, Katriona;
    Proceedings of the National Academy of Sciences, 2011
    Walsh, Elizabeth R; Thakar, Juilee; Stokes, Kindra; Huang, Fei; Albert, Reka; August, Avery;
    The Journal of Immunology, 2011
    Wang, Rui-Sheng; Pandey, Sona; Li, Song; Gookin, Timothy E; Zhao, Zhixin; Albert, Reka; Assmann, Sarah M;
    BMC genomics, 2011
    Bhardwaj, G; Wells, CP; Albert, R; van Rossum, DB; Patterson, RL;
    Systems Biology, IET, 2011
    Albert, Reka; DasGupta, Bhaskar; Hegde, Rashmi; Sivanathan, Gowri Sangeetha; Gitter, Anthony; G�_rsoy, Gamze; Paul, Pradyut; Sontag, Eduardo;
    Physical Review E, 2011
    Campbell, Colin; Thakar, Juilee; Albert, Reka;
    Physical Review E, 2011
    Saadatpour, Assieh; Wang, Rui-Sheng; Liao, Aijun; Liu, Xin; Loughran, Thomas P; Albert, Istv͍n; Albert, Reka;
    PLoS Comput Biol, 2011
    Campbell, Colin; Zhang, Ranran; Haley, Jeremy Scott; Liu, Xin; Loughran, Thomas; Schell, Todd; Albert, Reka; Thakar, Juilee;
    Frontiers in Systems Physiology, 2011
    Pandey, Sona; Wang, Ruishengg; Wilson, Liza; Li, Song; Zhao, Zhixin; Gookin, Timothy E; Assmann, Sarah M; Albert, Reka;
    Molecular systems biology, 2010
    Complex networks: An engineering view
    Cui, LiYing; Kumara, Soundar; Albert, Reka;
    IEEE Circuits and Systems Magazine, 2010
    Disease dynamics in a dynamic social network
    Christensen, Claire; Albert, Istv͍n; Grenfell, Bryan; Albert, Reka;
    Physica A: Statistical Mechanics and its Applications, 2010
    Boolean models of within-host immune interactions
    Thakar, Juilee; Albert, Reka;
    Current opinion in microbiology, 2010
    Dynamic models of immune responses: what is the ideal level of detail?
    Thakar, Juilee; Poss, Mary; Albert, Reka; Long, Gr͍inne H; Zhang, Ranran;
    Theoretical Biology and Medical Modelling, 2010
    Attractor analysis of asynchronous Boolean models of signal transduction networks
    Saadatpour, Assieh; Albert, Istv͍n; Albert, Reka;
    Journal of theoretical biology, 2010
    Inference of signal transduction networks from double causal evidence
    Albert, Reka; DasGupta, Bhaskar; Sontag, Eduardo;
    Computational Biology, 2010
    The Structural Network Properties of Biological Systems
    Brilli, Matteo; Li�_, Pietro; Ullner, Ekkehard; Koseska, Aneta; Zaikin, Alexey; Volkov, Evgenii; Kurths, J�_rgen; Garc�_a-Ojalvo, Jordi; Thakar, Juilee; Albert, Reka;
    Handbook On Biological Networks, 2010
    NETWORKS IN CELL BIOLOGY
    Albert, R;
    Complex Networks, 2010
    Discrete dynamic modeling of cellular signaling networks
    Albert, Reka; Wang, Rui-Sheng;
    Methods in enzymology, 2009
    Constraint-based network model of pathogen immune system interactions
    Thakar, Juilee; Saadatpour-Moghaddam, Assieh; Harvill, Eric T; Albert, Reka;
    Journal of the Royal Society Interface, 2009
    Discrete dynamic modeling with asynchronous update, or how to model complex systems in the absence of quantitative information
    Assmann, Sarah M; Albert, Reka;
    Plant Systems Biology, 2009
    An Overview of Systems Biology
    Albert, Reka; Assmann, Sarah M;
    Annual Plant Reviews, Plant Systems Biology, 2009
    Boolean Networks in Inference and Dynamic Modeling of Biological Systems at the Molecular and Physiological Level
    Thakar, Juilee; Albert, Reka;
    Handbook on Biological Networks, World Scientific, Singapore, 2009
    Network model of survival signaling in large granular lymphocyte leukemia
    Zhang, Ranran; Shah, Mithun Vinod; Yang, Jun; Nyland, Susan B; Liu, Xin; Yun, Jong K; Albert, Reka; Loughran, Thomas P;
    Proceedings of the National Academy of Sciences, 2008
    Inferring (biological) signal transduction networks via transitive reductions of directed graphs
    Albert, Reka; DasGupta, Bhaskar; Dondi, Riccardo; Sontag, Eduardo;
    Algorithmica, 2008
    NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks
    Kachalo, Sema; Zhang, Ranran; Sontag, Eduardo; Albert, Reka; DasGupta, Bhaskar;
    Bioinformatics, 2008
    Biological switches and clocks
    Tyson, John J; Albert, Reka; Goldbeter, Albert; Ruoff, Peter; Sible, Jill;
    Journal of The Royal Society Interface, 2008
    Studying the effect of cell division on expression patterns of the segment polarity genes
    Chaves, Madalena; Albert, Reka;
    Journal of The Royal Society Interface, 2008
    Toward understanding the structure and function of cellular interaction networks
    Thakar, Juilee; Christensen, Claire; Albert, Reka;
    Handbook of Large-Scale Random Networks, 2008
    Boolean network simulations for life scientists
    Albert, Istvan; Thakar, Juilee; Li, Song; Zhang, Ranran; Albert, Reka;
    Source Code for Biology and Medicine, 2008
    Differential gene expression in Arabidopsis wild_��type and mutant anthers: insights into anther cell differentiation and regulatory networks
    Wijeratne, Asela J; Zhang, Wei; Sun, Yujin; Liu, Wenlei; Albert, Reka; Zheng, Zhengui; Oppenheimer, David G; Zhao, Dazhong; Ma, Hong;
    The Plant Journal, 2007
    Network inference, analysis, and modeling in systems biology
    Albert, Reka;
    The Plant Cell, 2007
    Modeling systems-level regulation of host immune responses
    Thakar, Juilee; Pilione, Mylisa; Kirimanjeswara, Girish; Harvill, Eric T; Albert, Reka;
    PLoS Comput Biol, 2007
    A novel method for signal transduction network inference from indirect experimental evidence
    Albert, Reka; DasGupta, Bhaskar; Dondi, Riccardo; Kachalo, Sema; Sontag, Eduardo; Zelikovsky, Alexander; Westbrooks, Kelly;
    Journal of Computational Biology, 2007
    Systems-level insights into cellular regulation: inferring, analysing, and modelling intracellular networks
    Christensen, C; Thakar, J; Albert, R;
    IET systems biology, 2007
    Using graph concepts to understand the organization of complex systems
    Christensen, Claire; Albert, Reka;
    International Journal of Bifurcation and Chaos, 2007
    Variation in host susceptibility and infectiousness generated by co-infection: the myxoma Trichostrongylus retortaeformis case in wild rabbits
    Cattadori, Isabella M; Albert, Reka; Boag, Brian;
    Journal of the Royal Society Interface, 2007
    Search in spatial scale-free networks
    Thadakamalla, HP; Albert, Reka; Kumara, SRT;
    New Journal of Physics, 2007
    Shaping specificity in signaling networks
    Albert, Reka; Oltvai, Zolt͍n N;
    Nature genetics, 2007
    Large-scale inference and graph-theoretical analysis of gene-regulatory networks in B. Subtilis
    Christensen, Claire; Gupta, Anshuman; Maranas, Costas D; Albert, Reka;
    Physica A: Statistical Mechanics and its Applications, 2007
    Effects of Noise on Ecological Invasion Processes: Bacteriophage-Mediated Competition in Bacteria
    Joo, Jaewook; Harvill, Eric; Albert, Reka;
    Journal of Statistical Physics, 2007
    Near linear time algorithm to detect community structures in large-scale networks
    RAGHAVAN, Usha Nandini; ALBERT, Reka; KUMARA, Soundar;
    Physical review. E, Statistical, nonlinear, and soft matter physics, 2007
    Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling
    Li, Song; Assmann, Sarah M; Albert, Reka;
    PLoS Biol, 2006
    Methods of robustness analysis for Boolean models of gene control networks
    Chaves, Madalena; Sontag, Eduardo D; Albert, Reka;
    IEE Proc. Syst. Biol, 2006
    Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network
    Chung, Wen-Yu; Albert, Reka; Albert, Istvan; Nekrutenko, Anton; Makova, Kateryna D;
    BMC Bioinformatics, 2006
    Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites
    Gupta, Anshuman; Maranas, Costas D; Albert, Reka;
    Bioinformatics, 2006
    Bacteriophage-mediated competition in Bordetella bacteria
    Joo, Jaewook; Gunny, Michelle; Cases, Marisa; Hudson, Peter; Albert, Reka; Harvill, Eric;
    Proceedings of the Royal Society of London B: Biological Sciences, 2006
    Structure and timescale analysis in genetic regulatory networks
    Chaves, Madalena; Sontag, Eduardo D; Albert, Reka;
    Proceedings of the 45th IEEE Conference on Decision and Control, 2006
    Scale-free networks in cell biology
    Albert, Reka;
    Journal of cell science, 2005
    Robustness and fragility of Boolean models for genetic regulatory networks
    Chaves, Madalena; Albert, Reka; Sontag, Eduardo D;
    Journal of theoretical biology, 2005
    Modeling cascading failures in the North American power grid
    Kinney, Ryan; Crucitti, Paolo; Albert, Reka; Latora, Vito;
    The European Physical Journal B-Condensed Matter and Complex Systems, 2005
    Search in weighted complex networks
    Thadakamalla, Hari P; Albert, Reka; Kumara, Soundar RT;
    Physical Review E, 2005
    Structural vulnerability of the North American power grid
    Albert, Reka; Albert, Istvan; Nakarado, Gary L;
    Physical review E, 2004
    Conserved network motifs allow protein protein interaction prediction
    Albert, Istvan; Albert, Reka;
    Bioinformatics, 2004
    Boolean modeling of genetic regulatory networks
    Albert, Reka;
    Complex networks, 2004
    Dynamic Receptor Team Formation Can Explain the High Signal Transduction Gain in Escherichia coli
    Albert, Reka; Chiu, Yu-wen; Othmer, Hans G;
    Biophysical journal, 2004
    Survivability of multiagent-based supply networks: a topological perspective
    Thadakamalla, HP; Raghavan, UN; Kumara, S; Albert, R;
    IEEE Intelligent Systems, 2004
    The topology and signature of the regulatory interactions predict the expression pattern of the segment polarity genes in Drosophila melanogaster
    Albert, Reka; Othmer, Hans G;
    Journal of Theoretical Biology, 2003
    Spatial Pattern Formation and Morphogenesis in Development: Recent Progress for Two Model Systems
    Albert, Reka; Dillon, Robert; Gadgil, Chetan; Othmer, Hans G;
    Morphogenesis and Pattern Formation in Biological Systems, 2003
    Statistical mechanics of complex networks
    Albert, R; Barabasi, AL;
    Rev. Mod. Phys., 2002
    Stick-slip fluctuations in granular drag
    Albert, I; Tegzes, P; Albert, R; Sample, JG; Barabasi, A-L; Vicsek, T; Kahng, B; Schiffer, P;
    Physical Review E, 2001
    correction: Error and attack tolerance of complex networks
    Albert, Reka; Jeong, Hawoong; Barabasi, Albert-Laszlo;
    Nature, 2001
    Error and attack tolerance of complex networks
    Albert, Reka; Jeong, Hawoong; Barabasi, Albert-Laszlo;
    Nature, 2000
    Jamming and fluctuations in granular drag
    Albert, I; Tegzes, P; Kahng, B; Albert, R; Sample, JG; Pfeifer, M; Barabasi, A-L; Vicsek, T; Schiffer, P;
    Physical review letters, 2000
    Power-law distribution of the world wide web
    Adamic, Lada A; Huberman, Bernardo A;
    Science, 2000
    Topology of Evolving Networks: Local Events and Universality
    Albert, Reka; Barabasi, Albert-Laszlo;
    Physical Review Letters, 2000
    Response-Power-Law Distribution of the World Wide Web
    Barabasi, AL; Albert, R; Jeong, H; Bianconi, G;
    Science, 2000
    Scaling Laws for the Period of Boolean Networks
    Albert, Reka; Barabasi, Albert-Laszlo;
    Physical Review Letters, 2000
    The large-scale organization of metabolic networks
    Jeong, H; Tombor, B; Albert, R; Oltvai, ZN; Barabasi, AL;
    Nature, 2000
    Diameter of the world-wide web
    Albert, R; Jeong, H; Barabasi, AL;
    Nature, 1999
    Mean-field theory for scale-free random networks
    Barab͍asi, Albert-Laszlo; Albert, Reka; Jeong, Hawoong;
    Physica A: Statistical Mechanics and its Applications, 1999
    Emergence of scaling in random networks
    Barabasi, Albert-Laszlo; Albert, Reka;
    Science, 1999
    Slow drag in a granular medium
    Albert, R; Pfeifer, MA; Barabasi, A-L; Schiffer, P;
    Physical review letters, 1999
    The physics of sand castles: maximum angle of stability in wet and dry granular media
    Barabasi, Albert-Laszlo; Albert, Reka; Schiffer, Peter;
    Physica A: Statistical Mechanics and its Applications, 1999
    Liquid-induced transitions in granular media
    Tegzes, P; Albert, R; Paskvan, M; Barabasi, AL; Vicsek, T; Schiffer, P;
    Physical Review E, 1999
    Driven interfaces in disordered media: determination of universality classes from experimental data
    Albert, Reka; Barabasi, Albert-Laszlo; Carle, Nathan; Dougherty, Andrew;
    Physical review letters, 1998
    What keeps sandcastles standing?
    Hornbaker, DJ; Albert, Reka; Albert, Istvan; Barabasi, Albert-Laszlo; Schiffer, Peter;
    Nature, 1997
    Maximum angle of stability in wet and dry spherical granular media
    Albert, Reka; Albert, Istvan; Hornbaker, Daniel; Schiffer, Peter; Barabasi, Albert-Laszlo;
    Physical Review E, 1997